High Protein Bagels Cheddar Cheese Easy [No Yeast]

This high-protein bagel recipe packs 15 grams of protein per bagel and has a fluffy texture that beats regular store-bought versions. Made in under 30 minutes with Greek yogurt, almond flour, cheddar, and Italian seasoning, they’re perfect for batch prep, a make-ahead breakfast, and a great base for cream cheese or your favorite toppings. Gluten-free flour options are included!

Stack of cheddar cheese bagels.

This high-protein bagel recipe has 15 grams of protein per bagel and offers a satisfying, fluffy texture that beats regular or store-bought bagels, hands down. They’re quickly made in less 30 minutes with greek yogurt, almond flour, cheddar cheese, grated parmesan cheese, garlic powder, and Italian seasoning.

You’ll love how these homemade bagels have that perfect traditional bagel feel but with the added bonus of being a great make-ahead breakfast option. Whether you’re prepping for the week or looking for a quick way to boost your protein intake, these bagels are ideal for batch prep. They’re also a fantastic base for cream cheese or any of your favorite toppings, and I include gluten-free flour options if that’s your preference!

Why You’ll Love This Homemade Cheddar Cheese Bagel Recipe

  • Quick and Easy: These bagels come together in under 30 minutes, making them a perfect option for busy mornings or meal prep.
  • Loaded with Protein: Each bagel packs 15 grams of protein, giving you a satisfying, fluffy alternative to store-bought bagels.
  • Customizable Toppings: Perfect as a base for cream cheese or your favorite spreads, with gluten-free flour options available.
  • Great for Batch Prep: Make a batch for the week and enjoy them as a grab-and-go breakfast or snack any day!
Stack of cheddar cheese bagels.

Ingredients & Substitutions

Here is everything you need to make my easy high-protein bagels recipe:

Plain Greek Yogurt: Be sure to use greek yogurt. Regular yogurt will not work with this recipe because it’s not as thick as greek yogurt. You can replace it with cottage cheese for cottage cheese bagels, just blend it first for a smoother texture. 

All-Purpose Flour: Feel free to substitute with gluten-free flour if you’re avoiding gluten. Just make sure it’s a 1:1 blend without xanthan gum.

Almond Flour: Here is a chart with additional flour and measurements you can use. These replace the almond flour and all-purpose flour combo in the recipe card.

FLOURMEASUREMENTS
Oat Flour1 cup
Gluten-Free Flour (no xanthan gum)3/4 cup
Cassava Flour3/4 cup
All Purpose Flour3/4 cup

Parmesan Cheese: Swap this out for nutritional yeast if you’d like to keep it dairy-free but still want that cheesy flavor. Or you can omit it.

Baking Powder: There’s no exact substitute.

Italian Seasoning: Use dried oregano or basil if that’s what you have on hand, or a combination of both.

Garlic Powder: Fresh minced garlic can work here if you want a little extra punch of flavor.

Onion Powder: You can finely chop some fresh onion or shallots, though the flavor will be a bit stronger.

Salt: Sea salt or Himalayan pink salt work just fine as a substitute.

Grated Cheddar Cheese: You can use any kind of shredded cheese you like—Monterey Jack, mozzarella, or even a vegan cheese option.

Egg White: This is for the egg wash. You can omit the wash on top of the bagels or brush butter, light olive oil, or avocado oil. 

Stack of cheddar cheese bagels.

How to Make My Almond Flour Greek Yogurt Bagels Recipe

Here are easy, detailed, step-by-step instructions for making my healthy breakfast option. The instructions are also repeated in the recipe card at the bottom of this blog post.

Step 1: Make the Bagel Dough

Preheat your oven to 350°F (170°C) and line a baking sheet with parchment paper or a silicone mat.

In a large bowl, whisk together 2/3 cup Greek yogurt, 1-1/4 cups almond flour, 1/3 cup all-purpose flour, 2 tablespoons parmesan cheese, 2 teaspoons baking powder, 1 teaspoon Italian seasoning, 1/2 teaspoon garlic powder, 1/4 teaspoon onion powder, and 1/4 teaspoon salt. Stir until everything comes together into a sticky dough. The dough should be slightly tacky but not stick to your fingers. Add more flour or yogurt to adjust the consistency if needed.

Fold in 1/4 cup grated cheddar cheese into the dough. 

Adding dough ingredients to a mixing bowl.
Checking bagel dough consistency.

Step 2: Shape the Bagels

Divide the dough into 4 equal portions. Roll each portion into a ball, and place on your parchment-lined baking sheet. Then gently press your finger through the center to create the classic bagel shape. Separate the yolk from an egg white. Lightly brush the egg white on the top and sides of the bagels with a pastry brush. Fold in half of the 1/4 cup grated cheddar cheese into the dough.

Adding egg wash to the bagels.
Sprinkling cheddar cheese on top of the bagels.

Step 3: Bake the Bagels

Bake for 22-25 minutes, or until golden brown on top. Allow the bagels to cool slightly before slicing. 

Stack of cheddar cheese bagels.

Helpful Recipe Notes

Dough Consistency: The dough will be slightly sticky, but that’s normal! If it’s too sticky to handle, you can lightly dust your hands with some extra flour or almond flour to make shaping easier.

Shape Tip: Don’t worry if your bagels aren’t perfectly shaped. These are meant to be rustic and homemade, so embrace their unique look!

​Delicious Cheddar Cheese Bagel Serving Suggestions

  • Add Poppy Seeds for a more classic bagel flavor, sprinkling them on top before baking for that traditional touch.
  • Spread Peanut Butter on your bagels for a quick and easy snack that’s packed with extra protein, or pair it with your favorite jam for a sweet and salty combo.
  • Top With Pepperoni and cheese for a savory twist—almost like a mini pizza bagel! You can also use these bagels as a base for a quick cottage cheese pizza crust alternative.
  • Layer with Turkey and breakfast sausage for a protein-packed bagel sandwich that makes the perfect breakfast or lunch.
  • Drizzle With Honey over a warm toasted bagel for a deliciously sweet treat, especially on a day when you’re craving something simple.
  • For a low-carb bagel, try swapping out part of the almond flour for whey protein powder to add even more protein without the carbs.

Room Temperature: Store the bagels in an airtight container at room temperature for up to 2 days. Make sure they are completely cool before storing to avoid moisture buildup.

Refrigeration: If you want them to last a bit longer, place the bagels in the fridge in a sealed container. They will stay fresh for up to 5 days.

Freezing: These bagels freeze really well! Place them in a freezer-safe bag or container, and they can last up to 3 months. When you’re ready to eat, just thaw them at room temperature or pop them in the microwave or toaster oven to reheat.

Can I make this greek yogurt bagel recipe gluten-free?
Absolutely! Just swap the all-purpose flour with a gluten-free 1:1 baking flour, and you’ll have a delicious gluten-free version.

What if I don’t have Greek yogurt?
No worries! You can use plain unsweetened yogurt or even blended cottage cheese as a substitute. Both work great and will still give you that soft, chewy texture.

How do I keep the bagels from being too sticky?
The dough can be a bit sticky, but that’s totally normal! If it’s too hard to handle, just lightly dust your hands with some extra flour or almond flour to make shaping easier.

Can I add other flavors or toppings?
Definitely! You can add herbs like rosemary or thyme to the dough, or sprinkle everything bagel seasoning, extra cheese, or sesame seeds on top before baking for extra flavor.

Can I freeze the bagels?
Yes, these cheddar cheese bagels freeze wonderfully! Just pop them in a freezer-safe bag or container, and they’ll keep for up to 3 months. Reheat in the toaster or microwave whenever you’re craving one!

How do I reheat the bagels?
You can reheat them in the toaster, toaster oven, or microwave. If you like a crispy exterior, the toaster is the way to go!

Can I make the easy bagel dough ahead of time?
Yes! You can prepare the dough ahead and refrigerate it for up to 24 hours. When you’re ready to bake, just shape the bagels and pop them in the oven.

Do you love yeast-free bagels? Check out more of my easy and nutritious bagel recipes that do not require any yeast:

Stack of cheddar cheese bagels.

Cheddar Cheese Bagels with Greek Yogurt [No Yeast]

Gluten-Free diet-friendly recipe
This high-protein bagel recipe packs 15 grams of protein per bagel and has a fluffy texture that beats regular store-bought versions. Made in under 30 minutes with Greek yogurt, almond flour, cheddar, and Italian seasoning, they’re perfect for batch prep, a make-ahead breakfast, and a great base for cream cheese or your favorite toppings. Gluten-free flour options are included!
5 from 4 votes
Servings 4
Prep Time 10 minutes
Cook Time 24 minutes
Total Time 34 minutes

Ingredients
  

  • 2/3 cup greek yogurt
  • 1-1/4 cup almond flour
  • 1/3 cup all-purpose flour (or gluten-free flour)
  • 2 tablespoons parmesan cheese
  • 2 teaspoons baking powder
  • 1 teaspoon Italian seasoning
  • 1/2 teaspoon garlic powder
  • 1/4 teaspoon onion powder
  • 1/4 teaspoon salt
  • 1/4 cup grated cheddar cheese
  • 1 egg white

Instructions
 

  • Preheat your oven to 350°F (170°C) and line a baking sheet with parchment paper or a silicone mat.
  • In a large bowl, whisk together 2/3 cup Greek yogurt, 1-1/4 cups almond flour, 1/3 cup all-purpose flour, 2 tablespoons parmesan cheese, 2 teaspoons baking powder, 1 teaspoon Italian seasoning, 1/2 teaspoon garlic powder, 1/4 teaspoon onion powder, and 1/4 teaspoon salt. Stir until everything comes together into a sticky dough. The dough should be slightly tacky but not stick to your fingers. Add more flour or yogurt to adjust the consistency if needed.
    Fold in 1/4 cup grated cheddar cheese into the dough. 
  • Divide the dough into 4 equal portions. Roll each portion into a ball, and place on your parchment-lined baking sheet. Then, gently press your finger through the center to create the classic bagel shape. 
  • Separate the yolk from an egg white. Lightly brush the egg white on the top and sides of the bagels with a pastry brush. Sprinkle the remaining cheddar cheese on top of the bagels.
  • Bake for 22-25 minutes, or until golden brown on top. Allow the bagels to cool slightly before slicing. 

Video

YouTube video

Notes

Dough Consistency: The dough will be slightly sticky, but that’s normal! If it’s too sticky to handle, you can lightly dust your hands with some extra flour or almond flour to make shaping easier.
Shape Tip: Don’t worry if your bagels aren’t perfectly shaped. These are meant to be rustic and homemade, so embrace their unique look!

Nutrition

Calories: 303kcalCarbohydrates: 18gProtein: 15gFat: 21gSaturated Fat: 3gPolyunsaturated Fat: 0.2gMonounsaturated Fat: 1gTrans Fat: 0.003gCholesterol: 10mgSodium: 469mgPotassium: 91mgFiber: 4gSugar: 2gVitamin A: 100IUVitamin C: 0.05mgCalcium: 318mgIron: 2mg
Keyword greek yogurt, high protein, homemade bagels, no yeast
Did you make this recipe and love it?Please let me know in the comments below how it turned out 🙂

10 Comments

    1. That’s an excellent question, Cheryl 🙂 Using gluten-free flour without xanthan gum in this recipe helps keep the bagels lighter and fluffier. Since there’s no yeast and the almond flour and Greek yogurt already give the dough a good texture, xanthan gum isn’t really needed here. It can sometimes make things a bit too chewy, so skipping it makes the bagels soft and perfect! But since this recipe uses a small amount of gluten free flour you could try it with a half batch to see if you like the result before making a full batch 🙂

    1. Hi Karen, yes you can 🙂 I include a chart of flour substitutions and amounts in the Ingredients & Substitutions section on the recipe page. Oat flour is included 🙂 It replaces the almond flour AND all-purpose flour combo.

  1. 5 stars
    Wow, these bagels are good! I’ve never made bagels from scratch and these were so easy and had way more flavor than i was expecting. Thank you for a great recipe!

  2. 5 stars
    The cheddar cheese in these bagels is so delicious! And they only take 30 minutes from start to finish. I hope you enjoy this recipe 🙂

5 from 4 votes

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