Preheat the oven to 350°F (175°C). Line a baking sheet with parchment paper.
In a small food processor or chopper cup with an immersion blender, add 1/3 cup cottage cheese and blend until smooth.
In a large mixing bowl, add 1/3 cup blended cottage cheese, 1/4 cup coconut oil, 2/3 cup cane sugar until smooth, 2 teaspoons vanilla extract, and 1 teaspoon apple cider and mix until smooth with a hand mixer or upright stand mixer. Add 1 egg white and mix until incorporated.
Add the dry ingredients, including 1 cup almond flour, 1 cup oat flour, 1/4 cup tapioca flour, 1/4 cup protein powder, 1 teaspoon cinnamon, 1/2 teaspoon baking soda, and 1/2 teaspoon salt and mix until you have a soft cookie dough. Fold in 1 cup chocolate chips.
Scoop dough onto the prepared baking sheet, leaving space between each cookie.An optional hack for getting chocolate chips on top of the cookie is to add about 7-8 chips to the empty cookie scoop. Then scoop cookie dough into the scoop, being careful not to spill the chocolate chips. Then, release the scoop of cookie dough onto the cookie sheet, and the chocolate chips will now be on top of the cookie. Gently press them down to shape the cookie. Bake for 9–11 minutes or until edges are lightly golden. Cool completely on a wire rack.